FAST5 in Coffee
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Contents:
Processing and Analyzing FAST5 files from a minION Run
FAST5 Files
Installation
Data Tree
Failed Minion Run QC Report
FASTQC Directory and HTML OUTPUT
Summary
Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adpater Content
Successful Minion Run QC Report
FASTQC Directory and HTML OUTPUT
Summary
Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adpater Content
MinIONQC.R
Channel Summary
Flowcell Overview
GB Per Channel Overview
Length Per Hour
Length Histogram
Length vs. Quality
Quality by Hour
Quality Histogram
Reads Per Hour
Yield by Length
Yield Over Time
FAST5 in Coffee
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