FAST5 in Coffee
latest

Contents:

  • Processing and Analyzing FAST5 files from a minION Run
    • FAST5 Files
      • Installation
        • Data Tree
    • Failed Minion Run QC Report
      • FASTQC Directory and HTML OUTPUT
        • Summary
        • Basic Statistics
        • Per base sequence quality
        • Per sequence quality scores
        • Per base sequence content
        • Per sequence GC content
        • Per base N content
        • Sequence Length Distribution
        • Sequence Duplication Levels
        • Overrepresented sequences
        • Adpater Content
    • Successful Minion Run QC Report
      • FASTQC Directory and HTML OUTPUT
        • Summary
        • Basic Statistics
        • Per base sequence quality
        • Per sequence quality scores
        • Per base sequence content
        • Per sequence GC content
        • Per base N content
        • Sequence Length Distribution
        • Sequence Duplication Levels
        • Overrepresented sequences
        • Adpater Content
    • MinIONQC.R
      • Channel Summary
      • Flowcell Overview
      • GB Per Channel Overview
      • Length Per Hour
      • Length Histogram
      • Length vs. Quality
      • Quality by Hour
      • Quality Histogram
      • Reads Per Hour
      • Yield by Length
      • Yield Over Time
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